I am not talking about urban trains though. Urban trains are not 100 car freight trains. They are Light Rail. I am talking about continental and intercontinental freight trains. Heavy Rail. NY to LA or Hong Kong to Rome.
Maglevs aren't limited to local trains. It is a propulsion tech, that could be used by any kind of rail over any distance. Long distances make more sense than short for maglev because of its extreme speed. So far I think the maglev lines are mostly short, because it is still in a proof of concept stage.
There is not such a clear dividing line between urban and intercity trains, but rather a gradation of types. IRL, many big cities have trams, subways, urban railways, regional trains, interregional and intercity. For many journeys, the traveller can choose between them. Helsinki-Tampere, for example is normally intercity service because of the distance, but is it possible to take a regional train, which uses the same cars as the urban train, if you don't mind taking twice as long. These travel the same tracks but have different cars and engines than the intercity. Helsinki subways, however, have different and lighter and slower cars than the urban trains, and trams still different and even slower.
If we are talking about a Traveller setting, though, the trains will be whatever is useful, or logically arises in a particular situation.
In terms of archologies, you'd have transport within, but also between them, and likely different types of trains depending on how far you go. Elevated trains would definitely be a way to save time taking those turbo-lifts.
The NY to LA connection uses 60s retro-tech like all the long distance Amtrack lines. I took Minneapolis to Portland and it was definitely an experience from another era.