They have tonnage. They just don't have individually calculated tonnage. Their tonnage is lumped in with other things.
Page 20 High Guard
"Computers do not consume any tonnage on a ship – while they do have a physical presence, they are distributed throughout the ship and considered part of other components such as the bridge, staterooms, and drives."
I took half of the tonnage for the cockpit and the drives from the Ultralight Fighter, because that is an obscene number and it should be much lower just to see how small the computer would be even if I vastly overestimated it's actual size. Then changed the computer from a TL-7 Computer/5 to a TL-15 Computer/5 as per the rules in the CSC. It also would cost roughly 118Cr.