Its scattered.
Basics are done as per shooting rules, with the advanced stuff crpping up as effects of certain Special Actions (especially Intensify Defensive Fire and Take Evasive Action), Special Traits details for Seeking Weapons (make sure you check the errata for the changes there) and the Defensive Fire and Evading Seeking Weapons stuff in the Advanced Rules area.
If its not got anything to say in those sections that is relevant to any situation, then generally treat it as just another weapon system.
Oh and the Fed special rules stuff is at the start of their Fleet List.
